Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/final_filtering.cwl Branch/Commit ID: aaecc710f76be9285288a975cc786e354bc9bedf |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/picard_markduplicates.cwl Branch/Commit ID: aaecc710f76be9285288a975cc786e354bc9bedf |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/samtools_sort.cwl Branch/Commit ID: aaecc710f76be9285288a975cc786e354bc9bedf |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: aaecc710f76be9285288a975cc786e354bc9bedf |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 505b91e41741ccbcd5ebd2b6a09a3be604f9ece3 |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00 |
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FASTQ Vector Removal
This workflow clean up vectros from fastq files |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/remove-fastq-reads-from-blast.cwl Branch/Commit ID: 527251ebb77750d02dcc9a370d978a153fc9328f |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: 935a78f1aff757f977de4e3672aefead3b23606b |
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Single-cell Differential Expression
Single-cell Differential Expression =================================== Runs differential expression analysis for a subset of cells between two selected conditions. |
https://github.com/datirium/workflows.git
Path: workflows/sc_diff_expr.cwl Branch/Commit ID: 935a78f1aff757f977de4e3672aefead3b23606b |
