Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph BLAST against rRNA db

https://github.com/ncbi/pgap.git

Path: bacterial_noncoding/wf_blastn.cwl

Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757
workflow graph Run tRNAScan

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_trnascan.cwl

Branch/Commit ID: 83ef15482f405bc3d24f88cbf405ceffea9b3023
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd
workflow graph mixed_library_metrics.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/mixed_library_metrics.cwl

Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3
workflow graph etl.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/checkout_workflow/etl.cwl

Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
workflow graph Detect DoCM variants

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: 88f1e02b261bf9ce882eba306b6245c64328632b
workflow graph fastqtosam_pe.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastqtosam/fastqtosam_pe.cwl

Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: b4a6e46405c08e0b14ad92f0ab38bcc4a69caa5c
workflow graph cram_to_bam workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd