Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	msi_workflow.cwl Workflow to run the MSI analysis on a batch of samples and merge the results back into a single data clinical file	https://github.com/mskcc/pluto-cwl.git Path: cwl/msi_workflow.cwl Branch/Commit ID: 45604eaeea15030c7302941c761464ce392abf74
	Cell Ranger Aggregate Cell Ranger Aggregate =====================	https://github.com/datirium/workflows.git Path: workflows/cellranger-aggr.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	SV filtering workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_sv_vcf.cwl Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 788bdc99c1d5b6ee7c431c3c011eb30d385c1370
	concat.cwl	https://github.com/mskcc/pluto-cwl.git Path: cwl/concat.cwl Branch/Commit ID: 45604eaeea15030c7302941c761464ce392abf74