Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: 1.0.9
workflow graph wf-loadContents.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents.cwl

Branch/Commit ID: main
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 1.0.5
workflow graph status_postgres_workflow.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/status/status_postgres_workflow.cwl

Branch/Commit ID: 1.1
workflow graph Initial CNVkit analysis

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/cnvkit_initial_analysis.cwl

Branch/Commit ID: master
workflow graph GSC Paired Jobs

Serial combination of KnowEnG tools

 https://github.com/KnowEnG-Research/cwl-specification.git

Path: code/workflow.gsc.cwl

Branch/Commit ID: master
workflow graph topmed-alignment-checker.cwl

https://github.com/DataBiosphere/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: master
workflow graph rw-distr.cwl

run scatter-gather for rw stage

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/rw-distr.cwl

Branch/Commit ID: master
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master
workflow graph step2: trimming fastq files (paired-end)

multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/01_trimming_fastq_subworkflow_pe.cwl

Branch/Commit ID: main