Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	step-valuefrom3-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 5c40c5a0464c84076e0e407a0e05522b43bdc0a6
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5