Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Detect Variants workflow
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![]() Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
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Detect Variants workflow
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![]() Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
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atm-plev-n2n.cwl
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![]() Path: scripts/cwl_workflows/atm-unified/atm-plev-n2n.cwl Branch/Commit ID: c5607619b8aa560552333a8b16f5ad9cd93a2d42 |
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dna-seq-alignment.cwl
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![]() Path: workflows/dna-seq-alignment/cwl/dna-seq-alignment.cwl Branch/Commit ID: 2b17bda1bef5808d5c1ef5ed10748e5a6ba7aea5 |
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Unaligned to aligned BAM
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![]() Path: definitions/subworkflows/align.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4 |
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tt_univec_wnode.cwl
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![]() Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485 |
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Exome QC workflow
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![]() Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
![]() Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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revcomp.cwl
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![]() Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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exome alignment and germline variant detection
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![]() Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268 |