Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 2f65fc96207a71b1cda4e246f808bed056608cd0
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 656113dcac0de7cef6cff6c688f61441ee05872a
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872
	concat.cwl	https://github.com/mskcc/pluto-cwl.git Path: cwl/concat.cwl Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5