Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Varscan Workflow
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![]() Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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Run pindel on provided region
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![]() Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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vecscreen.cwl
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![]() Path: vecscreen/vecscreen.cwl Branch/Commit ID: e9cc6de8cd1e00345969c646e5e6f27d7d10420f |
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umi per-lane alignment subworkflow
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![]() Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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varscan somatic workflow
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![]() Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0 |
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rnaseq-alignment-quantification
This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator |
![]() Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee |
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Creates FASTA file from BED coordinates
This workflow creates FASTA file from BED coordinates |
![]() Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee |
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exome alignment and germline variant detection, with optitype for HLA typing
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![]() Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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atac_encode_samples.cwl
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![]() Path: python/lib/MICGENT/data/cwl/atac_encode_samples.cwl Branch/Commit ID: 0be1abb140bfad17f8a166d0c804fb1e9ad64537 |
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clean_reads_qc.cwl
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![]() Path: python/lib/MICGENT/data/cwl/clean_reads_qc.cwl Branch/Commit ID: 0be1abb140bfad17f8a166d0c804fb1e9ad64537 |