Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
	scatter-wf3.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81 Packed ID: main
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	Detect Variants workflow for WGS pipeline	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4
	conflict.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/conflict.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 Packed ID: main
	assemble.cwl Assemble a set of reads using SKESA	https://github.com/ncbi/pgap.git Path: assemble.cwl Branch/Commit ID: 4f4448f71645275db5b84eb551990dfe3bf37cbb