Explore Workflows

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snaptools_create_snap_file.cwl

Branch/Commit ID: 53415520f94ac0d9a1fae89af0f6e8250240723a

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snapanalysis_setup_and_analyze.cwl

Branch/Commit ID: 53415520f94ac0d9a1fae89af0f6e8250240723a

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl

Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc_alignment_wf.cwl

Branch/Commit ID: 13a9d4f9b6a895a6bdd2b1590d556c06fe04fccd

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b

DNAseq pipeline from bam to vcf in distributed mode

https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-bam2vcf-distr.cwl

Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_alignment.cwl

Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5

https://github.com/datirium/workflows.git

Path: metadata/chipseq-header.cwl

Branch/Commit ID: 657eb494c880480574ac111dab4e11a06453d168