Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Create Genomic Collection for Bacterial Pipeline, ASN.1 input

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source_asn.cwl

Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b
workflow graph Exome QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph bam_readcount workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_readcount.cwl

Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: 13a9d4f9b6a895a6bdd2b1590d556c06fe04fccd
workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: 900c0bce5268977bce7ed034789cc07a567ba422
workflow graph textures.cwl

Create emblem textures

 https://github.com/undu/stellaris-emblem-lab.git

Path: textures/textures.cwl

Branch/Commit ID: aca472a8f0b95118e227f98fc0d550ad651ff631
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/workflow_no_dup_marking.cwl

Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31
workflow graph lobSTR-workflow.cwl

https://github.com/common-workflow-language/cwlviewer.git

Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl

Branch/Commit ID: 244afa5f14a285c82e3732001526446b8a189948
workflow graph STAR-Alignment-PE

This workflow aligns the fastq files using STAR for paired-end samples

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment.cwl

Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2