Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph GATKBaseRecalBQSRWorkflow_4_1_3.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/GATKBaseRecalBQSRWorkflow_4_1_3.cwl

Branch/Commit ID: 837622844b24a90eda4f0589cc557f6e4ca0d975
workflow graph Replace legacy AML Trio Assay

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph gather AML trio outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/aml_trio_cle_gathered.cwl

Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e
workflow graph genomics-workspace.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace.cwl

Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d
workflow graph bact_get_kmer_reference

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter-wf4.cwl

Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489

Packed ID: main
workflow graph Chipseq alignment for mouse with qc and creating homer tag directory

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/chipseq_alignment_mouse.cwl

Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6
workflow graph downsample unaligned BAM and align

https://github.com/genome/cancer-genomics-workflow.git

Path: unaligned_bam_to_bqsr/downsample_workflow.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 4b5970dcf08bac2598e62ffd2673e67a25004c40