Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_seq_entry_extract_wnode	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: be4060eec958c419c0f559da575533c8e0459ae5
	Cut-n-Run pipeline paired-end Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed	https://github.com/datirium/workflows.git Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: 1f03ff02ef829bdb9d582825bcd4ca239e84ca2e
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 9143dc4ebacb9e1df36a712b0be6fa5d982b0c4f
	apolloServer-createOrganism-workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: apolloServer-createOrganism-workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 66b5bc323dcd23e1b2c14bf4783babf0f15ca43b
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 7e3e1cb249e85285e27ef3ebd4104965f835241d
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316