Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	io-int-optional-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/io-int-optional-wf.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223
	output-arrays-file-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/output-arrays-file-wf.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b
	chip-seq-alignment.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/chip-seq-alignment.cwl Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee
	scatterfail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/scatterfail.cwl Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	genomel_cohort_gatk4.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/genomel_cohort_gatk4.cwl Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471
	import_schema-def.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/import_schema-def.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b