Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	kmer_compare_wnode	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs_gvcf.cwl Branch/Commit ID: ef7f3345b352319ec22dffba26c79df033b141f9
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: 7a058fed2987bc0046ffbc9a2b8a39b5b4fec6e1