Explore Workflows

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 5833078

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines12-wf.cwl

Branch/Commit ID: main

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/filtering.cwl

Branch/Commit ID: master

https://github.com/mr-c/WGSpipeline.git

Path: Workflows/germline-gpu.cwl

Branch/Commit ID: cuda_fixes

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: master

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: low-vaf

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 930a2cf

https://github.com/sevenbridges-openworkflows/Broad-Best-Practice-Germline-snps-and-indels-variant-calling-CWL1.0-workflow-GATK-4.1.0.0.git

Path: gatk-best-practice-generic-germline-short-variant-per-sample-cal_decomposed.cwl

Branch/Commit ID: master

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_vardict_module.cwl

Branch/Commit ID: master