Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97
	EMG assembly for paired end Illumina	https://github.com/farahzkhan/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: 6430df56f7345f837d3f9c3f7fb5af5aa9dadc90
	MoveData-workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: MoveData-workflow.cwl Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	workflow.cwl	https://github.com/yangchoo/automatic-octo-waddle.git Path: cwl/workflow.cwl Branch/Commit ID: 2ca2966176ea8a21055ed096c0fc3f47a02deb30
	genomics-workspace-genome.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d
	output-arrays-int-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/output-arrays-int-wf.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b