Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
	revcomp.cwl	https://github.com/alexbarrera/GGR-cwl.git Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	kfdrc_process_se_readslist2.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_se_readslist2.cwl Branch/Commit ID: f656d2d32200bee9d3b001af03d5c8b3d5fcb3a7
	apolloServer-createOrganism-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: apolloServer-createOrganism-workflow.cwl Branch/Commit ID: cbcba0db7174398aa6a009ef2a63a93f8fa6bf52
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268