Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Preprocess fastq

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph index sim seq

create sorted / filtered similarity file with feature sequences, and index by md5

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/index_sim_seq.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph abundance

abundace profiles from annotated files, for protein and/or rna

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/abundance.workflow.cwl

Branch/Commit ID: 210a46717d091c186235d211c1175f02d0a644b6
workflow graph Detect DoCM variants

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5
workflow graph star-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-cufflinks/paired_end/star-cufflinks_wf_pe.cwl

Branch/Commit ID: 85c5420fad00cc6ecefb08d3be999e82d4a69bae
workflow graph integrity.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/integrity.cwl

Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_alignment.cwl

Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd
workflow graph trnascan_wnode and gpx_qdump combined

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_scan_and_dump.cwl

Branch/Commit ID: d2884980a33ba4097cb3514cab5b425e2112fe10
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: 83ef15482f405bc3d24f88cbf405ceffea9b3023
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64