Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	1st-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 2a922ab11b2f9c21ae4955c74563543b87717b93
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
	gatk4W.cwl Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.	https://github.com/ambarishK/bio-cwl-tools.git Path: gatk4W.cwl Branch/Commit ID: fcab170f3e8a4bc70601650401cce2a9df42f484
	bam2fasta.cwl	https://github.com/hpobio-lab/viral-analysis.git Path: cwl/fastq2fasta/bam2fasta.cwl Branch/Commit ID: 24465ba219711f2828e633d25d9f183e0f0eaccd
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595
	preprocess.cwl	https://github.com/epigenomics-screw/screw.git Path: cwl/preprocess.cwl Branch/Commit ID: eca4d48b08fef0a81518ce3441ed47fcfff412a6
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139
	01-qc-se.cwl ATAC-seq 01 QC - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	nc_rna_workflow.cwl	https://github.com/mb1069/rfam-production.git Path: cwl/workflows/nc_rna_workflow.cwl Branch/Commit ID: cbb7bd8985dc8dd3e81f2e885879c0ac90387b4e
	TAP	https://github.com/MG-RAST/amplicon.git Path: CWL/Workflows/tap.prok.workflow.cwl Branch/Commit ID: 67fc58a072d6a72658a54244f6dded172f57314c