Explore Workflows

https://github.com/duke-gcb/imads-worker.git

Path: predict_service/preference-workflow.cwl

Branch/Commit ID: f6faaa5108cf468b0deec0f391abbd4d98721d84

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: a7d65918c444ee3c99c56bd0f08c2ce670a853ed

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 823cdf7a6601a3799f6167f3566ae02590748f6b

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/dynresreq-workflow.cwl

Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576

https://github.com/mr-c/spiel.git

Path: spiel.cwl

Branch/Commit ID: 22d5f98c20156859741052fd1989ebafb142bb1b

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/examples/1st-workflow.cwl

Branch/Commit ID: 1eb6bfe3c77aebaf69453a669d21ae7a5a78056f

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: c162a19d83f872fe0dc0077e18bef22c99423e4d

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 88c5eef2f5ee5c1e878b0476f6e1f74cecf9ec29

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl

Branch/Commit ID: 53031601de415a071b7034b28984393db183efa7