Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 8fbfb03088968846bb2c0a79ac50b231b43db64f |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: f248ac3ccbf6840af721251c7e9451abd9b2c09f |
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Gathered Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_downsample_and_recall.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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alignment for nonhuman with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs_nonhuman.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: f248ac3ccbf6840af721251c7e9451abd9b2c09f |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
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Detect Docm variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f |
