Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: cff6ca51706f18b1c7052d801d05414f489cec58

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 96324c1392b6b774498e415346956e77e5d8dd86

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 712de5a25d08e359f831f60d1aedd0f3fd1ca32d

https://github.com/johnbradley/iMADS-worker.git

Path: predict_service/predict-workflow.cwl

Branch/Commit ID: 308f28c12949210735184154dd7722eb6ec06977

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 5dc7c5ca618a248a99bd4bf5f3042cdb21947193

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 35a98a23d8e108dbd91814c1688d22063f23a8ea

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: c752ff9f6ad67aa302d793867ba0ea33b85e6bd3

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 35a98a23d8e108dbd91814c1688d22063f23a8ea

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/transform.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/metrics.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0