Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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![]() Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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Running cellranger count and lineage inference
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![]() Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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somatic_subpipeline.cwl
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![]() Path: janis_pipelines/wgs_somatic/cwl/tools/somatic_subpipeline.cwl Branch/Commit ID: 837622844b24a90eda4f0589cc557f6e4ca0d975 |
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GATK4_SomaticVariantCaller_4_1_3_0.cwl
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![]() Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl Branch/Commit ID: 837622844b24a90eda4f0589cc557f6e4ca0d975 |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
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bam_readcount workflow
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![]() Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb |
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conflict.cwl#main
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![]() Path: tests/wf/conflict.cwl Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf Packed ID: main |
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wf-variantcall.cwl
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![]() Path: somatic-lowfreq/smcounter2-umi-workflow/wf-variantcall.cwl Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac |
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gcaccess_from_list
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![]() Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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![]() Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a |