Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd
workflow graph env-wf3.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl

Branch/Commit ID: 691dea280b40ac177b4a38b33375139ca0ce7e81
workflow graph bwa_pe.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_pe.cwl

Branch/Commit ID: 6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf
workflow graph fastq_clean_se.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/fastq_clean_se.cwl

Branch/Commit ID: 6698fbd8d0a6155d2008d4e89ab1110fbef9ebbf
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2
workflow graph kfdrc_alignment_pipeline.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl

Branch/Commit ID: 7a7d6a943b504690341efad2c2ff5fea5d9afd0d
workflow graph dedup-2-pass-distr.cwl

run 2-pass dedup: algo LocusCollector + algo Dedup sequentially in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-2-pass-distr.cwl

Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23
workflow graph bwa_se.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_se.cwl

Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3
workflow graph gatk4_cohort_genotyping.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/gatk4_cohort_genotyping.cwl

Branch/Commit ID: 286bce04c474d28bddeb7dbe43ab8d59919fe855
workflow graph extract_amplicon_kit.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_amplicon_kit.cwl

Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3