Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Run tRNAScan
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e |
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Non-Coding Bacterial Genes
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 269d656eb8eaa5fc29a5f74cb0aa5756868b46b7 |
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Non-Coding Bacterial Genes
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/baminou/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: 9b7fde6e34f632ceb1d0e2b1a5799a6f722688c5 |
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kmer_top_n_extract
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216 |
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collate_unique_rRNA_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_rRNA_headers.cwl Branch/Commit ID: e1b0fceb0efce1b787b5782408cdf6f163b8ff56 |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: 712de5a25d08e359f831f60d1aedd0f3fd1ca32d |
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protein_extract
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https://github.com/ncbi-gpipe/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab |
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wf_makeblastdb.cwl
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https://github.com/ncbi/pipelines.git
Path: amr_finder/wf_makeblastdb.cwl Branch/Commit ID: 567a2d3c57f22f6954416c2e48d630cccf0b0cdd |
