Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_nonhuman.cwl

Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
workflow graph cram_to_bam workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
workflow graph htseq_workflow.cwl

https://github.com/NCI-GDC/htseq-cwl.git

Path: workflows/subworkflows/htseq_workflow.cwl

Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab
workflow graph BAM to BEDPE

Comvert BAM to BEDPE and compress the output

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bamtobedpe-gzip.cwl

Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874
workflow graph stage_data_workflow.cwl

https://github.com/NCI-GDC/htseq-cwl.git

Path: workflows/subworkflows/stage_data_workflow.cwl

Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab
workflow graph upload_results_workflow.cwl

https://github.com/NCI-GDC/htseq-cwl.git

Path: workflows/subworkflows/upload_results_workflow.cwl

Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab
workflow graph Raw sequence data to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
workflow graph Per-region pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
workflow graph chipseq-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/chipseq-header.cwl

Branch/Commit ID: 10ce6e113f749c7bd725e426445220c3bdc5ddf1
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f