Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Identifies non-coding RNAs using Rfams covariance models
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: e9bbe2917384efc75ba067db23612bc8e22f3f06 |
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04-quantification-pe-stranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 5f120e5bc3c0f75bfbc636ea2c6f4393f5d45ca1 |
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abundance
abundace profiles from annotated files, for protein and/or rna |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: 091374dc59a23966338638a668ae397d4ee20b2f |
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wgs alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a |
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hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl Branch/Commit ID: ff0e5dfe44fb85900b5563ab340de8ad3d952eb5 |
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step-valuefrom3-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 8d8512061f2367c90aac67bcbf92af1061b4af59 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |