Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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CLE gold vcf evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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diffbind-parallel.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/diffbind-parallel.cwl Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098 |
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Filter Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305 |
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Genomic regions intersection and visualization
Genomic regions intersection and visualization ============================================== 1. Merges intervals within each of the filtered peaks files from ChIP/ATAC experiments 2. Overlaps merged intervals and assigns the nearest genes to them |
https://github.com/datirium/workflows.git
Path: workflows/intervene.cwl Branch/Commit ID: 9e3c3e65c19873cd1ed3cf7cc3b94ebc75ae0cc5 |
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varscan somatic workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/varscan.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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htseq_count_workflow.cwl
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https://github.com/NCI-GDC/htseq-cwl.git
Path: workflows/htseq_count_workflow.cwl Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab |