Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 958b2a392ab2513aa0fbfab558dbf844b549669d

https://github.com/smc-rna-challenge/zhanghj-9609594.git

Path: main.cwl

Branch/Commit ID: 9495f778ed203c82c554144f9ae2dc7e3b66378b

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/IFB-ElixirFr/ReproHackathon.git

Path: reprohackathon1/cwl/tools/rnaseq.cwl

Branch/Commit ID: 94ec2488b995f995ca9d5d093219519254bbcc65

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 47d6375df6c6e4486e03d964b3abf1d71943e609

https://github.com/genome/arvados_trial.git

Path: varscan/workflow.cwl

Branch/Commit ID: 202b43b7449485a317c857d62ca7d39196764e65

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/workflow.cwl

Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0