Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Dockstore.cwl

INTEGRATE workflow: untar, tophat align, samtools index, Integrate fusion

 https://github.com/Jeltje/integrate.git

Path: Dockstore.cwl

Branch/Commit ID: d30bfc8382d2e5d3842523ef5410d6c915940b4b
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: f736cf8f663fbba8f1b4158431f2b6a6d88491b4
workflow graph Bacterial Annotation (two-pass) pass 1

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass1.cwl

Branch/Commit ID: a539d600357a48a558daf43fc41a89aae79f9e86
workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: fa86fce570ab91c624272c8ffda672069d2f276d
workflow graph LSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: 823cdf7a6601a3799f6167f3566ae02590748f6b
workflow graph Varscan Workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/workflow.cwl

Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e
workflow graph Exome QC workflow

https://github.com/genome/arvados_trial.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: 202b43b7449485a317c857d62ca7d39196764e65
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 823cdf7a6601a3799f6167f3566ae02590748f6b
workflow graph rnaseq.cwl

https://github.com/IFB-ElixirFr/ReproHackathon.git

Path: reprohackathon1/cwl/tools/rnaseq.cwl

Branch/Commit ID: 760ad34ddd7c9253bd5a9a269f95c20be14eefad
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009