Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	exome alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f
	Creates FASTA file from BED coordinates This workflow creates FASTA file from BED coordinates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098
	Per-chromosome pindel	https://github.com/genome/cancer-genomics-workflow.git Path: pindel/pindel_cat.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	FASTQ Vector Removal This workflow convert fastq to multiple fasta files	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/fastq-to-splitted-fasta.cwl Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098
	Filter Protein Seeds; Find ProSplign Alignments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	bacterial_kmer	https://github.com/ncbi/pgap.git Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	prefactor_calibrator.cwl	https://git.astron.nl/eosc/prefactor3-cwl.git Path: workflows/prefactor_calibrator.cwl Branch/Commit ID: 0c4dd2bb6c1259ecc9eabbe287bd5f795195b755