Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rmats_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/rmats_wf.cwl

Branch/Commit ID: master
workflow graph rnaseq-alignment-quantification

This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RNA-Seq/rnaseq-quantification-qc.cwl

Branch/Commit ID: master
workflow graph bqsr-flow.cwl

Run BQSR pre+post+plot flow

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/bqsr-flow.cwl

Branch/Commit ID: master
workflow graph tnhc-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/tnhc-distr.cwl

Branch/Commit ID: master
workflow graph BD Rhapsody™ Targeted Analysis Pipeline

The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

 https://github.com/longbow0/cwl.git

Path: v1.8/rhapsody_targeted_1.8.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph workflow.cwl

https://github.com/52North/testbed16-jupyter-notebooks.git

Path: workflow_water_masks/workflow.cwl

Branch/Commit ID: docker-native
workflow graph methylCtools_trim_align_merge_sort_dedup.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/tools/methylCtools_trim_align_merge_sort_dedup.cwl

Branch/Commit ID: main
workflow graph 01-qc-se.cwl

ATAC-seq 01 QC - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: v1.0
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph Example of setting up a simulation system

Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).

https://github.com/stain/biobb_example_workflow.git

Path: protein_md.cwl

Branch/Commit ID: master