Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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readgroup_fastq_pe.cwl
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![]() Path: workflows/mirnaseq_automation/readgroup_fastq_pe.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3 |
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Exome QC workflow
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![]() Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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Raw sequence data to BQSR
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![]() Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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Detect Docm variants
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![]() Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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pindel parallel workflow
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![]() Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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strelka workflow
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![]() Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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Varscan Workflow
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![]() Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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wgs alignment and germline variant detection
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![]() Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8 |
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Cut-n-Run pipeline paired-end
Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed |
![]() Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: 9850a859de1f42d3d252c50e15701928856fe774 |