Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	lobSTR-workflow.cwl	https://github.com/common-workflow-language/cwlviewer.git Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl Branch/Commit ID: c4569e8d890342065fa6626a08c6e34256f8cd9d
	phase VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	Subsample BAM file creating a tagAlign and pseudoreplicates This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3
	tt_kmer_compare_wnode Pairwise comparison	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	heatmap.cwl Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension	https://github.com/Barski-lab/workflows.git Path: workflows/heatmap.cwl Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1
	Creates FASTA file from BED coordinates This workflow creates FASTA file from BED coordinates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3
	STAR-RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq_star_fusion.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5