Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Align reference proteins plane complete workflow

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_protein_alignment.cwl

Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a
workflow graph EMG core analysis

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-core-analysis-v4.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph kmer_build_tree

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_kmer_build_tree.cwl

Branch/Commit ID: 8dcf1cc79ea26e9fec999e77ceae1aebfff2cff6
workflow graph etl.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/etl.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: ad42ab7a8c7e190d5f8615b52278346262256424
workflow graph spurious_annot pass2

https://github.com/ncbi-gpipe/pgap.git

Path: spurious_annot/wf_spurious_annot_pass2.cwl

Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3
workflow graph pdf2wordcloud.cwl

https://github.com/wilke/CWL-Quick-Start.git

Path: CWL/Workflows/pdf2wordcloud.cwl

Branch/Commit ID: af44711eef08f6012827314d0d809277283eb799
workflow graph Run genomic CMsearch (Rfam rRNA)

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: qiime2-03-dada2.cwl