Explore Workflows

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: preprocess_vcf.cwl

Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_se.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/griffithlab/regtools-cwl.git

Path: regtools/workflow.cwl

Branch/Commit ID: c25ff825502cd51dbcf5aa72525ca9890cf8d70c

ChIP-seq - map - PCR Bottleneck Coefficients

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065

ChIP-seq - map - PCR Bottleneck Coefficients

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: 067e518c3e3a7488e2aaa0b0b269be87d18fc99e

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 56dafa4dab5892c5afa35713563dddc78ec5a00d

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-dir.cwl

Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470

Packed ID: align-texts-wf.cwl

ATAC-seq 04 quantification - SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl

Branch/Commit ID: 067e518c3e3a7488e2aaa0b0b269be87d18fc99e

ATAC-seq 03 mapping - reads: SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl

Branch/Commit ID: 067e518c3e3a7488e2aaa0b0b269be87d18fc99e