Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Detect Variants workflow
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![]() Path: detect_variants/detect_variants.cwl Branch/Commit ID: 8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
![]() Path: zip_and_index_vcf.cwl Branch/Commit ID: a7d65918c444ee3c99c56bd0f08c2ce670a853ed |
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extract_gencoll_ids
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![]() Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216 |
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GATK-Sub-Workflow-h3abionet-indel.cwl
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![]() Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel.cwl Branch/Commit ID: 8e841da119480fdc626dedca572e55d15f9b017f |
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etl.cwl
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![]() Path: workflows/checkout_workflow/etl.cwl Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0 |
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step-valuefrom-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 2a8af96d334e6979cb00af4569581d192d43ce41 |
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wf-alignment.cwl
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![]() Path: NA12878-chr20/NA12878-platinum-chr20-workflow/wf-alignment.cwl Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e |
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Non-Coding Bacterial Genes
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![]() Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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![]() Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 35a98a23d8e108dbd91814c1688d22063f23a8ea |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files |
![]() Path: workflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: 77330fac31568e2c3e080ea771df813c039aefe6 |