Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Detect Variants workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: detect_variants/detect_variants.cwl

Branch/Commit ID: 8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb

workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: a7d65918c444ee3c99c56bd0f08c2ce670a853ed

workflow graph extract_gencoll_ids

https://github.com/ncbi-gpipe/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: 0932e4d778ea981cdc19702eab7fc8d572fe8216

workflow graph GATK-Sub-Workflow-h3abionet-indel.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel.cwl

Branch/Commit ID: 8e841da119480fdc626dedca572e55d15f9b017f

workflow graph etl.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/checkout_workflow/etl.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

workflow graph step-valuefrom-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl

Branch/Commit ID: 2a8af96d334e6979cb00af4569581d192d43ce41

workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA12878-chr20/NA12878-platinum-chr20-workflow/wf-alignment.cwl

Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e

workflow graph Non-Coding Bacterial Genes

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_noncoding/wf_bacterial_noncoding.cwl

Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955

workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 35a98a23d8e108dbd91814c1688d22063f23a8ea

workflow graph bam-bedgraph-bigwig.cwl

Workflow converts input BAM file into bigWig and bedGraph files

https://github.com/Barski-lab/ga4gh_challenge.git

Path: workflows/bam-bedgraph-bigwig.cwl

Branch/Commit ID: 77330fac31568e2c3e080ea771df813c039aefe6