Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Run genomic CMsearch (Rfam rRNA)

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: qiime2-03-dada2.cwl
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: f993cada89d2c6f7480a0d56baa7836a361b1f3a
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: giab-joint/giab-joint-workflow/wf-variantcall.cwl

Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: giab-chm/giab-chm-workflow/wf-variantcall.cwl

Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e
workflow graph GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl

Branch/Commit ID: 8e841da119480fdc626dedca572e55d15f9b017f
workflow graph Exome QC workflow

https://github.com/MarkRobbo/workflows.git

Path: workflows/hello/exome_alignment_packed.cwl

Branch/Commit ID: 0ae2468ab2ba0b9a196c2aa89b580555750bf0f6

Packed ID: workflow_exome.cwl
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-single.cwl

Branch/Commit ID: 886df9de6713e06228d2560c40f451155a196383
workflow graph rnaseq-pt1.cwl

Star/HTSeq RNA Seq Pipeline

 https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/rnaseq-pt1.cwl

Branch/Commit ID: 903ac0debdb35062aa655046d5ac99f4417e6da2
workflow graph exomeseq-00-prepare-reference-data.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-00-prepare-reference-data.cwl

Branch/Commit ID: 903ac0debdb35062aa655046d5ac99f4417e6da2