Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	wf-variantcall.cwl	https://github.com/bcbio/bcbio_validation_workflows.git Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-variantcall.cwl Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac
	pipeline-se-blacklist-removal.cwl ATAC-seq pipeline - reads: SE - with blacklist removal	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
	03-map-se.cwl ATAC-seq 03 mapping - reads: SE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl Branch/Commit ID: 67e8ccd5abddbd9e27f23ceeb95536fecf792d93
	Get Proteins	https://github.com/ncbi/pgap.git Path: wf_bacterial_prot_src.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	04-peakcall-se.cwl ATAC-seq 04 quantification - SE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 67e8ccd5abddbd9e27f23ceeb95536fecf792d93
	1st-workflow.cwl	https://github.com/common-workflow-language/user_guide.git Path: _includes/cwl/21-1st-workflow/1st-workflow.cwl Branch/Commit ID: 540b9f36322425817e097a348153d97b97376af3
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5