Explore Workflows

https://github.com/epigenomics-screw/screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: master

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 0cd2d70

This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE

https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl

Branch/Commit ID: master

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_apollo2_data_processing/processing/workflow.cwl

Branch/Commit ID: master

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/join-reads2plot.cwl

Branch/Commit ID: master

https://github.com/MontgomeryLab/tinyRNA.git

Path: tiny/cwl/workflows/preprocessing.cwl

Branch/Commit ID: master

https://github.com/cancerit/cgpRna.git

Path: cwls/tools/lane_map_and_stats.cwl

Branch/Commit ID: dev

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ChIPseq.cwl

Branch/Commit ID: master

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA24385-sv/NA24385-sv-workflow/wf-svcall.cwl

Branch/Commit ID: master