Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Filter Protein Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_align_filter.cwl

Branch/Commit ID: 8dcf1cc79ea26e9fec999e77ceae1aebfff2cff6
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: f993cada89d2c6f7480a0d56baa7836a361b1f3a
workflow graph extract_readgroup_fastq_se_http.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroup_fastq_se_http.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba
workflow graph wf_input_norm_and_entropy.cwl

This workflow normalizes clip aligned reads against a size-matched input sample. Then, an entropy score is calculated for each peak found.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_input_norm_and_entropy.cwl

Branch/Commit ID: a1a328cca75310b30582154390447b351c6ee541
workflow graph Seed Search Compartments

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: aaafb033b3b96843142c8a481a135bfb9d0b28e9
workflow graph packed.cwl#per_cluster_workflow.cwl

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/ProvCaptureOutput/RunTimeResearchObject/workflow/packed.cwl

Branch/Commit ID: f0b553d37e4255a3291393948f3e308bd88ed301

Packed ID: per_cluster_workflow.cwl
workflow graph packed.cwl#main

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/ProvCaptureOutput/RunTimeResearchObject/workflow/packed.cwl

Branch/Commit ID: f0b553d37e4255a3291393948f3e308bd88ed301

Packed ID: main
workflow graph extract_capture_kit_http.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_capture_kit_http.cwl

Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319
workflow graph Find Marker Alignments

https://github.com/ncbi-gpipe/pgap.git

Path: clade_assign/wf_find_marker_alignments.cwl

Branch/Commit ID: be4060eec958c419c0f559da575533c8e0459ae5
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 406343e20d5dd85932e1364f7a29a59e800458e0