Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 4e4d2e674bde612f98f2b0370445f8b2a47587df
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b
	module-2	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-2.cwl Branch/Commit ID: 5b6fb984f3cf8e971d677c92a096cd437f34b787
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546
	Seed Search Compartments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c
	bowtie-index.cwl Generates indices for bowtie v1.2.0 (12/30/2016).	https://github.com/datirium/workflows.git Path: workflows/bowtie-index.cwl Branch/Commit ID: a7b031090f49ab52195a561c162b326998028a35
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 5f120e5bc3c0f75bfbc636ea2c6f4393f5d45ca1
	basename-fields-test.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: 875b928ce50a3202f5954843b79ea86683c160fa
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: 1f501e38ff692a408e16b246ac7d64d32f0822c2
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a