Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: wgs_workflow.cwl Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b |
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ROH_workflow.cwl
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https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/analysis-workflows/ROH_workflow.cwl Branch/Commit ID: 8c9284622ea52a2f0bf24533b46ead59d35a32e9 |
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etl.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/etl.cwl Branch/Commit ID: ff015418f870bdfbd82ba675eb549fe8b4584b0c |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/cancer-genomics-workflow.git
Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 8f21f80a504c7fb834af331715a0661707d25537 |
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bwa_se.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/bwa_se.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: 6430df56f7345f837d3f9c3f7fb5af5aa9dadc90 |
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wf-alignment.cwl
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https://github.com/FarahZKhan/bcbio_test_cwl.git
Path: somatic/somatic-workflow/wf-alignment.cwl Branch/Commit ID: 7c46d5c6ef6501dc0e07a9b740e9de64ffec83f5 |
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WGS QC workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31 |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede |
