Explore Workflows

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Graph Name Retrieved From View
workflow graph 04-peakcall-pe.cwl

ATAC-seq 04 quantification - PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065
workflow graph Seed Search Compartments

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: c18fbba1308aed7406b94e9ddac02584407d9319
workflow graph transform_mirna.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/transform_mirna.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph readgroups_bam_to_readgroups_fastq_lists.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba
workflow graph status_postgres.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/status_postgres.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0
workflow graph bwa_pe.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_pe.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba
workflow graph bwa_se.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_se.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba
workflow graph extract_capture_kit_http.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_capture_kit_http.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba
workflow graph conditional_markduplicates.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/conditional_markduplicates.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba
workflow graph wf_get_reproducible_eclip_peaks.cwl

The main workflow that produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each).

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_get_reproducible_eclip_peaks.cwl

Branch/Commit ID: a1a328cca75310b30582154390447b351c6ee541