Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Per-chromosome pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630
workflow graph fasta2taxa-plot

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/cluster2plot.cwl

Branch/Commit ID: 700de5444d35b3fff2a0536075a6e1d0f7b1446a
workflow graph ensembl_genomes_to_variation_graph_with_uniprot_annotation_rdf.cwl

https://github.com/vgteam/Veguns.git

Path: ensemblBacteriaUniProtVgExample/ensembl_genomes_to_variation_graph_with_uniprot_annotation_rdf.cwl

Branch/Commit ID: 92937002a9ef66c3900556ccc1abc0998ada433d
workflow graph sac-preprocess.cwl#main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/sac-preprocess.cwl

Branch/Commit ID: d6934f4f866401fcdf7b5884abb63f77b69aab62

Packed ID: main
workflow graph fastq_clean_pe.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/fastq_clean_pe.cwl

Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
workflow graph etl.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/etl.cwl

Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
workflow graph umi molecular alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/umi_molecular_alignment.cwl

Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115
workflow graph cwlsite.cwl

https://github.com/common-workflow-language/cwl-website.git

Path: site/cwlsite.cwl

Branch/Commit ID: e5582c10dfd71e5db49bac73516c283cf73cf0fd
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/revsort.cwl

Branch/Commit ID: 26c8b9ca0ffd37c5f76a46a36315f6fd944833fe