Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 83ef15482f405bc3d24f88cbf405ceffea9b3023
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115
	TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)	https://github.com/mscheremetjew/workflow-is-cwl.git Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: 93c7dee353f887e978ca8c5423a5c975c0796e40
	Runs InterProScan on batches of sequences to retrieve functional annotations.	https://github.com/mscheremetjew/workflow-is-cwl.git Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: 93c7dee353f887e978ca8c5423a5c975c0796e40
	Identifies non-coding RNAs using Rfams covariance models	https://github.com/mscheremetjew/workflow-is-cwl.git Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: 93c7dee353f887e978ca8c5423a5c975c0796e40
	transform_mirna.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/mirnaseq/transform_mirna.cwl Branch/Commit ID: d6c0acb0a5e8546dc96463c9d184ca96548e22b3
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757