Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kfdrc_bwamem_subwf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/dev/ultra-opt/kfdrc_bwamem_subwf.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (draft CWL version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 3168316 |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: master |
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preprocess.cwl
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https://github.com/Epigenomics-Screw/Screw.git
Path: cwl/preprocess.cwl Branch/Commit ID: dev |
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wf_demultiplex_pe.cwl
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https://github.com/yeolab/eclip.git
Path: cwl/wf_demultiplex_pe.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
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steps.cwl
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https://github.com/dimitrapanou/scrnaseq-cwl.git
Path: steps.cwl Branch/Commit ID: master |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3bb03c9b |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: ca6ca613 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
