Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: low-vaf
	iwdr_with_nested_dirs.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/iwdr_with_nested_dirs.cwl Branch/Commit ID: master
	Apply filters to VCF file	https://github.com/fgomez02/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: No_filters_detect_variants
	chunking-subwf-hmmsearch.cwl	https://github.com/EBI-Metagenomics/pipeline-v5.git Path: workflows/subworkflows/chunking-subwf-hmmsearch.cwl Branch/Commit ID: master
	gvcf-distr.cwl	https://github.com/sentieon/sentieon-cwl.git Path: stage/gvcf-distr.cwl Branch/Commit ID: master
	qc_workflow_wo_waltz.cwl This workflow is intended to be used to test the QC module, without having to run the long waltz step	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/QC/qc_workflow_wo_waltz.cwl Branch/Commit ID: master
	04-quantification-pe-revstranded.cwl RNA-seq 04 quantification	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: master
	TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)	https://github.com/EBI-Metagenomics/workflow-is-cwl.git Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: master
	Detect DoCM variants	https://github.com/fgomez02/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: No_filters_detect_variants
	check_md5_wf.cwl	https://github.com/heliumdatacommons/TOPMed_RNAseq_CWL.git Path: workflow/checker-workflows/check_md5_wf.cwl Branch/Commit ID: master

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