Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037 |
|
|
|
pindel parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e |
|
|
|
Bisulfite QC tools
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
|
|
|
process VCF workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
|
|
|
Per-region pindel
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
|
|
|
fp_filter workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
|
|
|
varscan somatic workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
|
|
|
bgzip and index VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
|
|
|
adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
|
|
|
HS Metrics workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21 |
