Explore Workflows
View already parsed workflows here or click here to add your own
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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module-1-2-chunk
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-1-2.chunk.cwl Branch/Commit ID: dev |
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umi duplex alignment workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: downsample_and_recall |
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workflow_mock_ngtax.cwl
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https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_mock_ngtax.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 0746e12 |
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snaptools_create_snap_file.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: 44dbe38 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 3f85843 |
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hecil.cwl
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https://github.com/Alves-Bruno/hecil-graph.git
Path: hecil.cwl Branch/Commit ID: master |
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EMG pipeline v4.0 (single end version)
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-single.cwl Branch/Commit ID: master |
