Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
readgroup_fastq_pe.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroup_fastq_pe.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
|
|
|
extract_readgroup_fastq_se_http.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroup_fastq_se_http.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
|
|
|
rnaediting2strands.workflow.cwl
|
https://github.com/YeoLab/sailor.git
Path: CWL-SINGULARITY-pipeline-building-code/cwl/rnaediting2strands.workflow.cwl Branch/Commit ID: 380ec4f544adcbb812e63486d2cf1471898897c7 |
|
|
|
xenbase-fastq-bowtie-bigwig-se-pe.cwl
|
https://github.com/datirium/workflows.git
Path: subworkflows/xenbase-fastq-bowtie-bigwig-se-pe.cwl Branch/Commit ID: 8d7ba680b7904da84ad611d184caf247da4a5dc7 |
|
|
|
gather-metrics.cwl
|
https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/modules/gather-metrics.cwl Branch/Commit ID: 8766def7f70f329e2a4c56239f141685a873599b |
|
|
|
echo-wc.cwl
Counts words of a message via echo and wc |
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/workflows/echo-wc.cwl Branch/Commit ID: 33bb847a875379da3a5702c7a98dfa585306b960 |
|
|
|
fastqtosam_pe.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a |
|
|
|
schemadef-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb |
|
|
|
Generate genome index bowtie
Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: ae2b231562822ed66b8e35e5452ae7f012416b2a |
|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a |
